While playing the map in skirmish mode, I once saw Ronin faction dudes digging their way through the ceiling. Dunno if that helps at all. Otherwise, I've played it dozens of times with no problem at all.
BTW, I absolutely love this scene! The art is top notch, and the simple triggers are used for good effect. Did the Ronin hack the clone tubes to make zombies? For what purpose?
One more thing: has anyone else beat the Zombie Cave with just the pedestrian brain guy? It was a bit challenging.